archiDART: a R package allowing root system architecture analysis using Data Analysis of Root Tracings (DART) output files

Research output: Contributions to collected editions/worksPublished abstract in conference proceedingsResearch

Authors

  • Benjamin Delory
  • Caroline Baudson
  • Yves Brostaux
  • Loïc Pagès
  • Patrick du Jardin
  • Pierre Delaplace
In 2010, Le Bot et al presented a free and open-access software (Data Analysis of Root Tracings - DART) allowing the analysis of complex root system architectures from captured images, particularly across time series. Using this software, a user has to manually identify roots as a set of links. After vectorization of a root system, three final data sets (RAC, TPS and LIE) can be exported as table files containing several attributes for (a) each individual root (e.g. root length), (b) each observation day or (c) each point used to construct the vectorized root system respectively. These data sets can finally be used either to calculate derived root system architecture (RSA) parameters or to draw the root system architecture at selected observation dates. However when an experiment involves the analysis and comparison of many root systems, the calculation of RSA parameters for each data set and the drawing of the corresponding vectorized root systems become time-consuming. In this context, we developed a R package, called archiDART, allowing both the automatic calculation of common root architecture parameters and the X-Y plotting of vectorized root systems for selected observation dates.
Original languageEnglish
Title of host publicationBook of short abstracts, poster presentations : 19th National Symposium on Applied Biological Sciences
Number of pages1
PublisherGembloux Agro-Bio Tech
Publication date07.02.2014
Pages14
Publication statusPublished - 07.02.2014
Event19th National Symposium on Applied Biological Sciences - NSABS 2014 - Gembloux Agro-Bio Tech (Liège University) , Gembloux, Belgium
Duration: 07.02.201407.02.2014
Conference number: 19
http://www.events.gembloux.ulg.ac.be/nsabs2014/nsabs-2014/

Recently viewed

Activities

  1. Global Text Processing in CSCL with Learning Protocols: A Coding Scheme for Eye Movement Analyses
  2. Design of small touch screen interfaces for older users: The impact of screen size, task difficulty and task complexity
  3. Presentation of the paper entitled "Vision-Based Deep Learning Algorithm for Detecting Potholes"
  4. Deterministic and Stochastic Models for Rota Scheduling in Public Bus Transport
  5. Plenary lecture entitled: Discrete Lyapunov Controllers for an Actuator in Camless Engines
  6. International Conference on Methods and Models in Automation an Robotics - MMAR 2016
  7. Investigating learner pragmatics at the discourse level: Challenges, complexities and insights
  8. archiDART: an R package for the automated 2D computation of root architectural traits
  9. Placemaking today: integrating place-oriented thinking into cultural policy frameworks
  10. Reflexive Multi-Criteria Evaluation as a tool to integrate Multiple Values into Decision-Making – a Case Study from Germany
  11. Performativity and Authenticity in the Web 2.0-Enhanced Foreign Language Classroom
  12. Performance resource depletion influence on performance: Advancing concepts and findings
  13. Keynote: Routines Research: More Critical?
  14. That is not enough–Or is it? A qualitative investigation of reference points in negotiations
  15. European University Institute
  16. Staging Science: new approaches in science communication, popular and artistic science performance
  17. Teaching Listening Comprehension in the EFL Classroom: Processes, Materials, Tasks and Tests
  18. Artificial Intelligence and Intellectual Property
  19. Governance Pluralism to manage the Complexity of Ecosystem Services Co-production

Publications

  1. A scalable approach for computing semantic relatedness using semantic web data
  2. Using Technologies for Foreign Language Learning in Inclusive Settings
  3. A wavelet-based algorithm without a priori knowledge of noise level for gross errors detection
  4. Analyzing multivariate dynamics using cross-recurrence quantification analysis (CRQA), diagonal-cross-recurrence profiles (DCRP), and multidimensional recurrence quantification analysis (MdRQA) - A tutorial in R
  5. An incomplete and simplifying introduction to linked data
  6. ACL–adaptive correction of learning parameters for backpropagation based algorithms
  7. Ambient Intelligence and Knowledge Processing in Distributed Autonomous AAL-Components
  8. Managing Business Process in Distributed Systems: Requirements, Models, and Implementation
  9. Development of a quality assurance framework for the open source development model
  10. Building a process layer for business applications using the blackboard pattern
  11. Paraphrasing Method for Controlling a Robotic Arm Using a Large Language Model
  12. Semantic Parsing for Knowledge Graph Question Answering with Large Language Models
  13. FaST: A linear time stack trace alignment heuristic for crash report deduplication
  14. Performance analysis for loss systems with many subscribers and concurrent services
  15. Volume of Imbalance Container Prediction using Kalman Filter and Long Short-Term Memory
  16. On the Decoupling and Output Functional Controllability of Robotic Manipulation
  17. Text Comprehension as a Mediator in Solving Mathematical Reality-Based Tasks
  18. Eliciting Learner Perceptions of Web 2.0 Tasks through Mixed-Methods Classroom Research
  19. Multilevel bridge governor by using model predictive control in wavelet packets for tracking trajectories
  20. An empirical comparison of different implicit measures to predict consumer choice
  21. Technical concept and evaluation design of the state subsidized project [Level-Q]
  22. Performance of methods to select landscape metrics for modelling species richness
  23. An Adaptive Resonance Regulator for an Actuator using Periodic Signals in Camless Engine Systems
  24. Integration of laboratory experiments into introductory electrical engineering courses
  25. Canopy structure influences arthropod communities within and beyond tree identity effects
  26. Modeling and simulation of the microstructural behaviour in thermal sprayed coatings
  27. The explanatory power of Carnegie Classification in predicting engagement indicators
  28. Test of advanced hyperfine structure theory by precision radio-frequency and laser spectroscopy in molybdenum
  29. Accidental Representation–The Reconfiguration of Representation through Social Media