1. //
  2. Start
  3. //
  4. Publikationen
  5. archiDART: a R package allowing root sys...
  6. Formate
  7. //

archiDART: a R package allowing root system architecture analysis using Data Analysis of Root Tracings (DART) output files

Publikation: Beiträge in Sammelwerken › Abstracts in Konferenzbänden › Forschung

Standard

archiDART: a R package allowing root system architecture analysis using Data Analysis of Root Tracings (DART) output files. / Delory, Benjamin; Baudson, Caroline; Brostaux, Yves et al.
Book of short abstracts, poster presentations: 19th National Symposium on Applied Biological Sciences. Gembloux Agro-Bio Tech, 2014. S. 14.

Publikation: Beiträge in Sammelwerken › Abstracts in Konferenzbänden › Forschung

Harvard

Delory, B, Baudson, C, Brostaux, Y, Pagès, L, du Jardin, P & Delaplace, P 2014, archiDART: a R package allowing root system architecture analysis using Data Analysis of Root Tracings (DART) output files. in Book of short abstracts, poster presentations: 19th National Symposium on Applied Biological Sciences. Gembloux Agro-Bio Tech, S. 14, 19th National Symposium on Applied Biological Sciences - NSABS 2014, Gembloux, Belgien, 07.02.14.

APA

Delory, B., Baudson, C., Brostaux, Y., Pagès, L., du Jardin, P., & Delaplace, P. (2014). archiDART: a R package allowing root system architecture analysis using Data Analysis of Root Tracings (DART) output files. In Book of short abstracts, poster presentations: 19th National Symposium on Applied Biological Sciences (S. 14). Gembloux Agro-Bio Tech.

Vancouver

Delory B, Baudson C, Brostaux Y, Pagès L, du Jardin P, Delaplace P. archiDART: a R package allowing root system architecture analysis using Data Analysis of Root Tracings (DART) output files. in Book of short abstracts, poster presentations: 19th National Symposium on Applied Biological Sciences. Gembloux Agro-Bio Tech. 2014. S. 14

Bibtex

@inbook{98079c321fb4471a99b37ea77132a96f,
title = "archiDART: a R package allowing root system architecture analysis using Data Analysis of Root Tracings (DART) output files",
abstract = "In 2010, Le Bot et al presented a free and open-access software (Data Analysis of Root Tracings - DART) allowing the analysis of complex root system architectures from captured images, particularly across time series. Using this software, a user has to manually identify roots as a set of links. After vectorization of a root system, three final data sets (RAC, TPS and LIE) can be exported as table files containing several attributes for (a) each individual root (e.g. root length), (b) each observation day or (c) each point used to construct the vectorized root system respectively. These data sets can finally be used either to calculate derived root system architecture (RSA) parameters or to draw the root system architecture at selected observation dates. However when an experiment involves the analysis and comparison of many root systems, the calculation of RSA parameters for each data set and the drawing of the corresponding vectorized root systems become time-consuming. In this context, we developed a R package, called archiDART, allowing both the automatic calculation of common root architecture parameters and the X-Y plotting of vectorized root systems for selected observation dates.",
keywords = "Biology",
author = "Benjamin Delory and Caroline Baudson and Yves Brostaux and Lo{\"i}c Pag{\`e}s and {du Jardin}, Patrick and Pierre Delaplace",
year = "2014",
month = feb,
day = "7",
language = "English",
pages = "14",
booktitle = "Book of short abstracts, poster presentations",
publisher = "Gembloux Agro-Bio Tech",
address = "Belgium",
note = "19th National Symposium on Applied Biological Sciences - NSABS 2014, NSABS 2014 ; Conference date: 07-02-2014 Through 07-02-2014",
url = "http://www.events.gembloux.ulg.ac.be/nsabs2014/nsabs-2014/",

}

RIS

TY - CHAP

T1 - archiDART: a R package allowing root system architecture analysis using Data Analysis of Root Tracings (DART) output files

AU - Delory, Benjamin

AU - Baudson, Caroline

AU - Brostaux, Yves

AU - Pagès, Loïc

AU - du Jardin, Patrick

AU - Delaplace, Pierre

N1 - Conference code: 19

PY - 2014/2/7

Y1 - 2014/2/7

N2 - In 2010, Le Bot et al presented a free and open-access software (Data Analysis of Root Tracings - DART) allowing the analysis of complex root system architectures from captured images, particularly across time series. Using this software, a user has to manually identify roots as a set of links. After vectorization of a root system, three final data sets (RAC, TPS and LIE) can be exported as table files containing several attributes for (a) each individual root (e.g. root length), (b) each observation day or (c) each point used to construct the vectorized root system respectively. These data sets can finally be used either to calculate derived root system architecture (RSA) parameters or to draw the root system architecture at selected observation dates. However when an experiment involves the analysis and comparison of many root systems, the calculation of RSA parameters for each data set and the drawing of the corresponding vectorized root systems become time-consuming. In this context, we developed a R package, called archiDART, allowing both the automatic calculation of common root architecture parameters and the X-Y plotting of vectorized root systems for selected observation dates.

AB - In 2010, Le Bot et al presented a free and open-access software (Data Analysis of Root Tracings - DART) allowing the analysis of complex root system architectures from captured images, particularly across time series. Using this software, a user has to manually identify roots as a set of links. After vectorization of a root system, three final data sets (RAC, TPS and LIE) can be exported as table files containing several attributes for (a) each individual root (e.g. root length), (b) each observation day or (c) each point used to construct the vectorized root system respectively. These data sets can finally be used either to calculate derived root system architecture (RSA) parameters or to draw the root system architecture at selected observation dates. However when an experiment involves the analysis and comparison of many root systems, the calculation of RSA parameters for each data set and the drawing of the corresponding vectorized root systems become time-consuming. In this context, we developed a R package, called archiDART, allowing both the automatic calculation of common root architecture parameters and the X-Y plotting of vectorized root systems for selected observation dates.

KW - Biology

UR - http://www.events.gembloux.ulg.ac.be/nsabs2014/wp-content/uploads/sites/8/2014/02/NSABS2014_book_short_abstracts.pdf

M3 - Published abstract in conference proceedings

SP - 14

BT - Book of short abstracts, poster presentations

PB - Gembloux Agro-Bio Tech

T2 - 19th National Symposium on Applied Biological Sciences - NSABS 2014

Y2 - 7 February 2014 through 7 February 2014

ER -

Weitere Publikationen dieser Person(en)

Exploring priority and year effects on plant diversity, productivity and vertical root distribution: first insights from a grassland field experiment

Alonso-Crespo, I. M., Temperton, V., Fichtner, A., Niemeyer, T., Schloter, M. & Delory, B., 03.2025, in: Journal of Vegetation Science. 36, 2, 41 S., e70026.

Publikation: Beiträge in Zeitschriften › Zeitschriftenaufsätze › Forschung › begutachtet

Priority effects transcend scales and disciplines in biology

Stroud, J. T., Delory, B. M., Barnes, E. M., Chase, J. M., De Meester, L., Dieskau, J., Grainger, T. N., Halliday, F. W., Kardol, P., Knight, T. M., Ladouceur, E., Little, C. J., Roscher, C., Sarneel, J. M., Temperton, V., van Steijn, T. L. H., Werner, C. M., Wood, C. W. & Fukami, T., 07.2024, in: Trends in Ecology and Evolution. 39, 7, S. 677-688 12 S.

Publikation: Beiträge in Zeitschriften › Übersichtsarbeiten › Forschung

A trait-based framework linking the soil metabolome to plant–soil feedbacks

Delory, B. M., Callaway, R. M. & Semchenko, M., 03.2024, in: New Phytologist. 241, 5, S. 1910-1921 12 S.

Publikation: Beiträge in Zeitschriften › Zeitschriftenaufsätze › Forschung › begutachtet

Collaborative benchmarking of functional-structural root architecture models: Quantitative comparison of simulated root water uptake

Schnepf, A., Black, C. K., Couvreur, V., Delory, B. M., Doussan, C., Heymans, A., Javaux, M., Khare, D., Koch, A., Koch, T., Kuppe, C. W., Landl, M., Leitner, D., Lobet, G., Meunier, F., Postma, J. A., Schäfer, E. D., Selzner, T., Vanderborght, J. & Vereecken, H., 10.08.2023, in: In Silico Plants. 5, 1, 21 S., diad005.

Publikation: Beiträge in Zeitschriften › Zeitschriftenaufsätze › Forschung › begutachtet

Hill–Chao numbers allow decomposing gamma multifunctionality into alpha and beta components

Chao, A., Chiu, C.-H., Hu, K.-H., van der Plas, F., Cadotte, M. W., Mitesser, O., Thorn, S., Mori, A. S., Scherer-Lorenzen, M., Eisenhauer, N., Bässler, C., Delory, B., Feldhaar, H., Fichtner, A., Hothorn, T., Peters, M. K., Pierick, K., von Oheimb, G. & Müller, J., 01.2024, in: Ecology Letters. 27, 1, 14 S., e14336.

Publikation: Beiträge in Zeitschriften › Zeitschriftenaufsätze › Forschung › begutachtet

Zuletzt angesehen

Aktivitäten

  1. A decoupled MPC using a geometric approach and feedforward action for motion control in robotino
  2. Digital Control of a Camless Engine Using Lyapunov Approach with Backward Euler Approximation
  3. Computer Simulations in Design. How Social Media meet Computational Methods in Design Processes
  4. Dynamic Resource Development: How Parties Exploit vs. Invest into Common Resources
  5. Computer Simulations in Design. How Social Media meet Computational Methods in Design Processes
  6. Adaptive Teaching interventions in mathematical problem-solving lessons
  7. Drafts in Action. Concepts and Practices of Artistic Intervention
  8. SIAM Conference on Applications of Dynamical Systems - DS 2023
  9. Plenary lecture entitled: "Wavelet Packets for Applications in Signal Processing and Control Systems"
  10. From Text to Data: AI and Human Expertise in Provenance Linked Open Data
  11. “Visual Rhetoric as a three-dimensional practice. Theorizing the interconnections between the visual rhetorical objects and the process of spectatorship”
  12. Control of a two-thermoelectric-cooler system for ice-clamping application using Lyapunov based approach
  13. A geometric approach for the design and control of an electromagnetic actuator to optimize its dynamic performance
  14. Convergence analysis of an approximated response function of the impedance probe
  15. Enhancing metacognition by using flipping classroom with geogebra
  16. Context-based discrimination in school

Publikationen

  1. What is learned in approach-avoidance tasks? On the scope and generalizability of approach-avoidance effects
  2. Using Technologies for Foreign Language Learning in Inclusive Settings
  3. Dynamic adjustment of dispatching rule parameters in flow shops with sequence-dependent set-up times
  4. Modeling and simulation of inelastic microstructure development and inhomogeneous material behavior via non-convex rate dependent gradient plasticity
  5. Insights from classifying visual concepts with multiple kernel learning
  6. A genetic algorithm for a self-learning parameterization of an aerodynamic part feeding system for high-speed assembly
  7. Wavelet based Fault Detection and RLS Parameter Estimation of Conductive Fibers with a Simultaneous Estimation of Time-Varying Disturbance
  8. Modeling and Performance Analysis of a Node in Fault Tolerant Wireless Sensor Networks
  9. Integrating Mobile Devices into AAL-Environments using Knowledge based Assistance Systems
  10. Using complexity metrics with R-R intervals and BPM heart rate measures
  11. Using learning protocols for knowledge acquisition and problem solving with individual and group incentives
  12. Using Decision Trees and Reinforcement Learning for the Dynamic Adjustment of Composite Sequencing Rules in a Flexible Manufacturing System
  13. Data-Driven flood detection using neural networks
  14. Building Assistance Systems using Distributed Knowledge Representations
  15. DialogueMaps: Supporting interactive transdisciplinary dialogues with a web-based tool for multi-layer knowledge maps
  16. Evaluation of Time/Phase Parameters in Frequency Measurements for Inertial Navigation Systems
  17. Anomaly detection in formed sheet metals using convolutional autoencoders
  18. Identification of structure-biodegradability relationships for ionic liquids - clustering of a dataset based on structural similarity
  19. The Scalable Question Answering Over Linked Data (SQA) Challenge 2018
  20. Exact and approximate inference for annotating graphs with structural SVMs
  21. Development of a quality assurance framework for the open source development model
  22. Different approaches to learning from errors: Comparing the effectiveness of high reliability and error management approaches
  23. A Control Scheme for PMSMs using Model Predictive Control and a Feedforward Action in the Presence of Saturated Inputs
  24. Changing the Administration from within:
  25. Dynamically changing sequencing rules with reinforcement learning in a job shop system with stochastic influences
  26. Joint entity and relation linking using EARL
  27. Using cross-recurrence quantification analysis to compute similarity measures for time series of unequal length with applications to sleep stage analysis
  28. Accounting and Modeling as Design Metaphors for CEMIS
  29. Recurrence quantificationanalysis as a general-purpose tool for bridging the gap between qualitative and quantitative analysis
  30. ActiveMath - a Learning Platform With Semantic Web Features
  31. An expert-based reference list of variables for characterizing and monitoring social-ecological systems